FMDtype
Interactive generation of FMDV genotyping reports using nucleotide sequences encoding the FMDV VP1 gene.
Upload data
FMDV sequence data are expected to be in FASTA format where the minimum length of each VP1 sequence submitted is ≥ 600 nucleotides [full
IUPAC
notation allowed]. This tool limits the computation to up to a maximum of 30 VP1 sequences submitted for each FMDV serotype.
Return to upload data
Tree building options
FMDV VP1 sequences have been analysed and categorised according to the specific FMDV serotype detected. The number of uploaded sequences allocated to each serotype are shown in brackets.
VP1 Phylogeny
The phylogeny visualised below has been reconstructed by maximum-likelihood using the GTR+G nucleotide substitution model. Branch supports were estimated using 1000 nonparametric bootstrap replicates + NNI search.
The units of branch length are in nucleotide substitutions per site. The tree is midpoint rooted